tag:blogger.com,1999:blog-29988551508189596712024-03-19T14:44:00.216+05:30GizmoQuest Computing LabIndependent Open Source Laboratory: Our Favourite Gizmo is the GPU!Avimanyuhttp://www.blogger.com/profile/01803357707927624012noreply@blogger.comBlogger1125tag:blogger.com,1999:blog-2998855150818959671.post-3634265908726363852019-04-18T20:37:00.042+05:302023-05-18T22:41:13.617+05:30Working with GPUs for Accelerated Computing: An Open Source & Decentralized Approach<div dir="ltr" style="text-align: left;" trbidi="on">
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A Convergence for Computing</span></h2>
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<span style="font-size: large;"><i><b>GizmoQuest Computing Lab</b></i>
is an Open Source, Independent laboratory which currently empowers Decentralized Bioinformatics Research, with the help of 3 Compute Servers and Workstations </span><span style="font-size: large;">(specifications available below) </span><span style="font-size: large;">to accelerate computational simulations and bring out
results much faster with GPUs. The lab has been used to author and
publish a book on GPU Computing: <a href="https://tinyurl.com/GPU-Computing" target="_blank">https://tinyurl.com/GPU-Computing</a>.</span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">The book has been enlisted at </span><span style="font-size: large;"><span style="font-size: large;"><a href="https://wiki.python.org/moin/AdvancedBooks" target="_blank">the advanced book list of the Python Programming Language</a></span> and also <a href="https://searchworks.stanford.edu/view/13756326" target="_blank">at Stanford Libraries</a>.</span><br />
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Just came to know that I received my first ever citation last January🥲❤️!<br /><br />It has been cited on a paper about application of deep learning algorithms on GPU/CPU hardware & analysis at the European Journal of Science and Technology.<br /><br />Grateful🙏!<a href="https://twitter.com/hashtag/phdlife?src=hash&ref_src=twsrc%5Etfw">#phdlife</a> <a href="https://twitter.com/PhDVoice?ref_src=twsrc%5Etfw">@PhDVoice</a> <a href="https://twitter.com/OpenAcademics?ref_src=twsrc%5Etfw">@OpenAcademics</a> <a href="https://t.co/xZjXymsv5Z">pic.twitter.com/xZjXymsv5Z</a></p>— Avimanyu Bandyopadhyay ☸️ (@iAvimanyu) <a href="https://twitter.com/iAvimanyu/status/1494998791799586817?ref_src=twsrc%5Etfw">February 19, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<a href="https://tinyurl.com/GPU-Computing" target="_blank"><img alt="https://tinyurl.com/GPU-Computing" border="0" data-original-height="1360" data-original-width="1103" height="640" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjqe98kgw43lYrDGhBffZ_3UIg2yimSDDibucvj9ZqxKw4_GD4i7hFZ_HtPka6079VDbEGsrb3DntzuK9HfMxmJHCEWqnBtjioHu4kLcKz3odXp52KBfSvZAIdO128Ed4Viv7gSFgGTM_Ii/s640/710G-qkzZWL.jpg" width="516" /></a></div>
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<a href="https://tinyurl.com/GPU-Computing" target="_blank"><img alt="https://tinyurl.com/GPU-Computing" border="0" data-original-height="1360" data-original-width="1103" height="640" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEio3fetOyd8ZEIHkXUBOdOc2F4aJ5wDp5-J6XyvCOEXKzjjYE3iHD2PFK2zaKBV7cO5ilkdCkXNNHbMvl8B6OquoF4cNVF2s5auRb8Dph71Jj5ytaV82bL2RA3unTGawUj4K_2Qjei0z2Vv/s640/715bF65%252BUQL.jpg" width="518" /></a></div>
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<span style="font-size: large;">The Deep Learning Perspective For The Book<br /></span></h3><h3 style="text-align: left;"><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEh-2-oXOoO_bLjgJJumLlV3FU-PdADlf0VliK16SJBcvC8KZx2MuMWsXUEQC629G3HbeUjJT21FMtEWEwQP4927d_bZlix-VxHKXvf3FolvjLozV30Mslze3vjCVkHidnHdoVnUm2Iqb7sI/s972/AI-ML-DL.png" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="972" data-original-width="859" height="640" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEh-2-oXOoO_bLjgJJumLlV3FU-PdADlf0VliK16SJBcvC8KZx2MuMWsXUEQC629G3HbeUjJT21FMtEWEwQP4927d_bZlix-VxHKXvf3FolvjLozV30Mslze3vjCVkHidnHdoVnUm2Iqb7sI/w566-h640/AI-ML-DL.png" title="How deep learning is a subset of machine learning and how machine learning is a subset of artificial intelligence (AI). Photo by Avimanyu786 / CC BY-SA" width="566" /></a></div><span style="font-size: medium;"><i><span style="font-weight: normal;">Figure:
How deep learning is a subset of machine learning and how machine
learning is a subset of artificial intelligence (AI). Photo by <a href="https://commons.wikimedia.org/wiki/File:AI-ML-DL.png" target="_blank">Avimanyu786</a> / <a href="https://creativecommons.org/licenses/by-sa/4.0" target="_blank">CC BY-SA</a></span></i></span><br /><span style="font-size: large;"><br /></span></h3></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">Here is a look at our liquid-cooled computer in action! </span><br />
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<span style="font-size: large;">Background</span></h3>
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<span style="font-size: large;">This laboratory caters to the growing requirements of accelerated research with a 300 mbps internet connection and is used for a wide variety of research applications. It provides modern computational and facilities currently for all kinds of research. It especially provides support for GPU Accelerated Computing. Likewise, it remains busy 24/7.</span><br />
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Description</span></h3>
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<span style="font-size: large;">The aim of this laboratory is to provide required Computing and Simulations facilities to creative learners, researchers and PhD students in order to meet their requirements of the growing trends in Bioinformatics and Science.</span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">The main emphasis is to do project work in lesser time with the use of GPUs and deep learning. Collaborative research is highly encouraged, and <a href="https://future.com/what-is-decentralized-science-aka-desci/" rel="nofollow" target="_blank">Decentralized Science, or </a></span><span style="font-size: large;"><a href="https://future.com/what-is-decentralized-science-aka-desci/" rel="nofollow" target="_blank">DeSci</a>, makes this very easily possible! How? Read on.</span><br />
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Primary Hardware Configuration</span></h3><h3><span style="font-size: large;"> </span></h3>
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<span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">AMD Ryzen 7 2700X Processor at 3.7 Ghz</span><br />
<span style="font-size: large;">AMD Radeon VII 16 GB HBM2 GPU (Vega 20 Architecture)</span><br />
<span style="font-size: large;">8 GB DDR4 RAM (tentative)</span><br />
<span style="font-size: large;">500 GB WD M2 SSD Blue</span><br />
<span style="font-size: large;">4 TB Western Digital HDD Red</span><br />
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Secondary Hardware Configuration</span></h3><h3><span style="font-size: large;"> </span></h3>
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<span style="font-size: large;">Nvidia RTX 2060 12 GB GDDR6 GPU (Maxwell Architecture)</span><br />
<span style="font-size: large;">32 GB GSkill DDR3 RAM</span><br />
<span style="font-size: large;">256 GB ADATA SSD</span><br />
<span style="font-size: large;">4 TB Western Digital HDD Green</span><br />
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<span style="font-size: large;">Tertiary Hardware Configuration</span></h3><span style="font-size: large;"> </span></div><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhD6cJAmrjCGn0LkObyG_ryxAMC0-qV0s3s1khn6evRZAopbw-WBxfZOqV-mTJjK7agIc0Wph_irTVZR4iEovs6P_fQCT_O6O7e-Ff_ORlLm0fwl7XW83jUjA4swQ-il1ZmIFuzMSgmUq8Nsp60hc5vC74ZD7l1JvI87CPyLjJEXrmm_qSw48RuMXb08g/s1600/GizmoQuest-Multi-GPU-Compute-Server.jpeg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img border="0" data-original-height="938" data-original-width="1600" height="305" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhD6cJAmrjCGn0LkObyG_ryxAMC0-qV0s3s1khn6evRZAopbw-WBxfZOqV-mTJjK7agIc0Wph_irTVZR4iEovs6P_fQCT_O6O7e-Ff_ORlLm0fwl7XW83jUjA4swQ-il1ZmIFuzMSgmUq8Nsp60hc5vC74ZD7l1JvI87CPyLjJEXrmm_qSw48RuMXb08g/w520-h305/GizmoQuest-Multi-GPU-Compute-Server.jpeg" width="520" /></a></div><br /><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> <br /></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">AMD Athlon 3000G </span><span style="font-size: large;">at 3.5 Ghz</span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">Nvidia RTX 3060 Ti 8 GB GDDR6 GPU x3<br /></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">Nvidia RTX 3090 24 GB GDDR6X GPU</span><br />
<span style="font-size: large;">32 GB Corsair DDR4 RAM</span><br />
<span style="font-size: large;">120 GB ADATA M2 SSD</span>
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<span style="font-size: large;"><b> </b></span></h3><h3><span style="font-size: large;"><b>Current Line of Work</b></span></h3>
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<span style="font-size: large;">Our primary goal is currently on building a platform for computational research through DeSci with <a href="https://www.nunet.io" rel="nofollow" target="_blank">NuNet</a>. We believe in convergence, be it Science or Art! Our founding
member, <a href="https://linktr.ee/avimanyu" rel="nofollow" target="_blank">Avimanyu Bandyopadhyay</a> is pursuing his PhD in Bioinformatics at <a href="https://makautwb.ac.in" target="_blank">Maulana Abul Kalam Azad University of Technology</a> since January 2016 and also working as a Systems Scientist at NuNet.</span><br />
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<span style="font-size: large;">Once
NuNet's Decentralized GPU infrastructure is live, we look forward to onboarding all the above
machines to help build a globally decentralized computing economy for researchers!</span><h3> <span style="font-size: large;"> <br /></span></h3>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Envisioning a cycle for a people's <a href="https://twitter.com/hashtag/DeSci?src=hash&ref_src=twsrc%5Etfw">#DeSci</a>:<br /><br />1. Solving computational problems with <a href="https://twitter.com/nunet_global?ref_src=twsrc%5Etfw">@nunet_global</a><br />2. Rewarding researchers for those solutions with <a href="https://twitter.com/nano?ref_src=twsrc%5Etfw">@nano</a><br />3. Converting required ӾNO to <a href="https://twitter.com/search?q=%24NTX&src=ctag&ref_src=twsrc%5Etfw">$NTX</a><br />4. Cycle repeats<a href="https://twitter.com/hashtag/NuNet?src=hash&ref_src=twsrc%5Etfw">#NuNet</a> <a href="https://twitter.com/hashtag/Nano?src=hash&ref_src=twsrc%5Etfw">#Nano</a><a href="https://twitter.com/hashtag/Decentralization?src=hash&ref_src=twsrc%5Etfw">#Decentralization</a> <a href="https://twitter.com/hashtag/Science?src=hash&ref_src=twsrc%5Etfw">#Science</a> <a href="https://twitter.com/hashtag/Compute?src=hash&ref_src=twsrc%5Etfw">#Compute</a><a href="https://t.co/voVksuxmQy">https://t.co/voVksuxmQy</a></p>— Avimanyu Bandyopadhyay ☸️ (@iAvimanyu) <a href="https://twitter.com/iAvimanyu/status/1585480671098589184?ref_src=twsrc%5Etfw">October 27, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<h3><span style="font-size: large;"> </span></h3><h3><span style="font-size: large;">Future Projects/Ideas on a Decentralized Network<br /></span></h3>
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<span style="font-size: large;">In the field of genomics, a simple modern run of DNA sequencing can take up to 1 TB per run according to computational biologists. So a 4 TB storage would take care of such requirements. Also, as an example, the transfer rate of the Radeon VII happens to be 1 TB/s with 1:4 FP64 performance at 3.46 TFLOPS (great at the consumer level)!</span><br />
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<span style="font-size: large;">This Mini Open Source Lab will be open to all diverse computational fields and <a href="http://openresearch.gizmoquest.com/" target="_blank">not just Science</a>. One great example would be <a href="https://en.wikipedia.org/wiki/Computational_archaeology" target="_blank">Computational Archaeology</a>. Such <a href="https://computationalarchaeology.wordpress.com/" target="_blank">ideas</a> could help preserve heritage sites such as the <a href="https://www.facebook.com/groups/SaveKailash/" target="_blank">Kailash temple</a> at Ellora!</span><br />
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<span style="font-size: large;">We're very much eager to explore the field of <a href="https://www.technologyreview.com/s/608322/the-emerging-science-of-computational-psychiatry/" target="_blank">Computational Psychiatry</a> and <a href="https://dornsife.usc.edu/psyc/computational-psychology/" target="_blank">Computational Psychology</a> especially through Video Games.</span></div>
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<div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">The <a href="https://www.gdcvault.com/play/1015364/The-5-Domains-of-Play" target="_blank">BIG 5 Domains of Play</a> have been explored and explained many times by Jason VandenBerghe at <a href="https://gdconf.com/" target="_blank">Game Developers Conference (GDC)</a> events.</span><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"></span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"> </span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;">Once our work is completed on building a Decentralized Computing Infrastructure, we look forward to exploring the above and more!</span></div><div dir="ltr" style="text-align: left;" trbidi="on"><span style="font-size: large;"><br /></span>
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Working Hours (Includes Manual/Automated)</span></h3>
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<span style="font-size: large;">9:00 AM - 12:00 AM IST (Subject to Change)</span><br />
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Contact</span></h3>
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<span style="font-size: large;">avimanyu[at]gizmoquest[dot]com</span><span style="font-size: large;"><br /></span>
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Avimanyuhttp://www.blogger.com/profile/01803357707927624012noreply@blogger.com0